Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AS202_00915Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
   0.620
ALU24838.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
ALU27529.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
ALU24839.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.423
ALU28250.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
ALU24840.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
Your Current Organism:
Myroides odoratimimus
NCBI taxonomy Id: 76832
Other names: CCUG 39352, CIP 105170, JCM 7460, LMG 4029, LMG:4029, M. odoratimimus, NCTC 11180
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