Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ALU24896.1LOG family protein YvdD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family. (189 aa)    
Predicted Functional Partners:
ALU28255.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.720
ALU24895.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
ALU24897.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
ALU24894.1
Maebl; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
Your Current Organism:
Myroides odoratimimus
NCBI taxonomy Id: 76832
Other names: CCUG 39352, CIP 105170, JCM 7460, LMG 4029, LMG:4029, M. odoratimimus, NCTC 11180
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