STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU24914.1Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (804 aa)    
Predicted Functional Partners:
ALU24915.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
ALU28209.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
ALU27935.1
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.544
ALU24738.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.533
ALU27934.1
SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.531
ALU24912.1
LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
ALU24913.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
ALU27201.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.501
ALU27605.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
ALU24911.1
Isocitrate dehydrogenase; NADP-specific, catalyzes the formation of 2-oxoglutarate from isocitrate or oxalosuccinate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monomeric-type IDH family.
      0.493
Your Current Organism:
Myroides odoratimimus
NCBI taxonomy Id: 76832
Other names: CCUG 39352, CIP 105170, JCM 7460, LMG 4029, LMG:4029, M. odoratimimus, NCTC 11180
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.