STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU25202.1GSCFA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
ALU25201.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.814
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.687
ALU25278.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.528
ALU27854.1
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
ALU25205.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
ALU25364.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.433
ALU25206.1
LemA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.423
ALU25207.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
ALU24752.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.408
ALU24753.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.408
Your Current Organism:
Myroides odoratimimus
NCBI taxonomy Id: 76832
Other names: CCUG 39352, CIP 105170, JCM 7460, LMG 4029, LMG:4029, M. odoratimimus, NCTC 11180
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.