Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALU26135.1Cell surface protein SprA; Derived by automated computational analysis using gene prediction method: Protein Homology. (2499 aa)    
Predicted Functional Partners:
ALU24963.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.974
ALU26013.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.969
ALU25694.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.930
ruvA
Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
  
  
 0.861
ALU26162.1
Outer membrane chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.857
ALU26299.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.843
ALU26225.1
PorT protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.829
ALU24964.1
Gliding motility lipoprotein GldJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.805
ALU25216.1
Gliding motility protein GldL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.805
ALU25215.1
Gliding motility protein GldM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.786
Your Current Organism:
Myroides odoratimimus
NCBI taxonomy Id: 76832
Other names: CCUG 39352, CIP 105170, JCM 7460, LMG 4029, LMG:4029, M. odoratimimus, NCTC 11180
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