Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALM93202.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)    
Predicted Functional Partners:
ALM93203.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
ALM93912.1
LexA repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.710
ALM93204.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.676
ALM93966.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.607
ALM93201.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.599
ALM93205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
recQ
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.507
ALM93200.1
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
ALM93288.1
DNA helicase II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
  
 
 0.491
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.479
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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