Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALM93443.1DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)    
Predicted Functional Partners:
ALM93444.1
Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.994
ALM93445.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.983
ALM93448.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.911
ALM95277.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.830
ALM93447.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
 
     0.703
ALM95303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.593
ALM93446.1
Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.542
ALM95278.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.504
ALM93464.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.497
ALM95160.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.480
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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