Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALM93852.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)    
Predicted Functional Partners:
hisS
histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.684
ALM93851.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
ALM93713.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.598
ALM93850.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
dnaK
Fe-S protein assembly chaperone HscA; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.516
ALM95117.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.505
ALM93619.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.503
ALM93320.1
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.446
ALM94645.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.446
ALM94416.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.445
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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