Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALM94237.1Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)    
Predicted Functional Partners:
ALM94236.1
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
ALM94235.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
ALM94238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
ALM94208.1
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.502
ALM94320.1
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.502
ALM94234.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.472
ALM93181.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.471
ALM94203.1
Conjugal transfer protein TrbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.471
ALM94314.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.471
ALM94233.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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