STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ablALysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)    
Predicted Functional Partners:
ALM94604.1
D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.942
ALM94603.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.941
ALM94606.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.843
ALM94605.1
Methionine ABC transporter substrate-binding protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.819
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
 0.683
ALM94602.1
L-lysine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.675
nifJ
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.670
ALM95325.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.670
ALM94608.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.625
ALM94610.1
3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.