STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALM94721.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
    0.790
ALM94719.1
Carbamoyl-phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
ALM94720.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.775
ALM94722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.710
ALM94718.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.643
ALM94717.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.623
ALM94723.1
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
ALM94724.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
ALM94712.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.598
ALM94725.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.593
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.