STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALM94807.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
ALM94808.1
Aminoacyl-histidine dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
ALM94809.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
ALM94810.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.511
ALM95197.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
gltS-2
Sodium:glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
       0.438
ALM94564.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.428
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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