Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
ALM95151.1DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
ALM93170.1
Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.972
ALM93074.1
DNA methylase N-4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
ALM93073.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.761
ALM95035.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
ALM95152.1
biotin--acetyl-CoA-carboxylase ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
mnmA-2
tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.639
ALM95154.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
ALM95150.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
ALM95193.1
LexA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.467
Your Current Organism:
Fusobacterium nucleatum polymorphum
NCBI taxonomy Id: 76857
Other names: ATCC 10953, CCUG 9126, DSM 20482, F. nucleatum subsp. polymorphum, Fusibacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium polymorphum, JCM 12990, NCTC 10562
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