nikB protein (Fusobacterium nucleatum animalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

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Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Fusobacterium nucleatum animalis

NCBI taxonomy Id: 76859
Other names: ATCC 51191, CCUG 32879, CIP 104879, DSM 19679, F. nucleatum subsp. animalis, Fusibacterium nucleatum subsp. animalis, Fusobacterium animalis, Fusobacterium nucleatum subsp. animalis, JCM 11025, NCTC 12276

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... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALF17278.1	nikA	RN98_03460	RN98_02200	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
ALF17278.1	nikB	RN98_03460	RN98_02205	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ALF17278.1	nikD	RN98_03460	RN98_02215	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
ALF17278.1	nikE	RN98_03460	RN98_02220	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
ALF18449.1	nikA	RN98_09760	RN98_02200	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
ALF18449.1	nikB	RN98_09760	RN98_02205	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
ALF18449.1	nikD	RN98_09760	RN98_02215	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
ALF18449.1	nikE	RN98_09760	RN98_02220	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
dppC3	nikA	RN98_04535	RN98_02200	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
dppC3	nikB	RN98_04535	RN98_02205	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
dppC3	nikD	RN98_04535	RN98_02215	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
dppC3	nikE	RN98_04535	RN98_02220	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
dppC4	nikA	RN98_05560	RN98_02200	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
dppC4	nikB	RN98_05560	RN98_02205	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
dppC4	nikD	RN98_05560	RN98_02215	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
dppC4	nikE	RN98_05560	RN98_02220	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
nikA	ALF17278.1	RN98_02200	RN98_03460	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
nikA	ALF18449.1	RN98_02200	RN98_09760	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
nikA	dppC3	RN98_02200	RN98_04535	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
nikA	dppC4	RN98_02200	RN98_05560	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762

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