Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALF17129.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3874 aa)    
Predicted Functional Partners:
ALF18625.1
Hemolysin activator protein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.784
ALF17086.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ALF17232.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ALF17640.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ALF18111.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
ALF18273.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
tolC2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.771
ALF17814.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
ALF16874.1
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ALF17772.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
Your Current Organism:
Fusobacterium nucleatum animalis
NCBI taxonomy Id: 76859
Other names: ATCC 51191, CCUG 32879, CIP 104879, DSM 19679, F. nucleatum subsp. animalis, Fusibacterium nucleatum subsp. animalis, Fusobacterium animalis, Fusobacterium nucleatum subsp. animalis, JCM 11025, NCTC 12276
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