STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sbcC2Exonuclease SbcC; Derived by automated computational analysis using gene prediction method: Protein Homology. (921 aa)    
Predicted Functional Partners:
sbcD
Exonuclease SbcD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
polA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.981
ALF18306.1
DNA helicase II; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.922
recQ
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.897
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 0.814
ALF18304.1
23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA; Belongs to the radical SAM superfamily. RlmN family.
       0.779
ALF18305.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
ALF18303.1
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
queH
Recombinase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.773
ALF18310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Fusobacterium nucleatum animalis
NCBI taxonomy Id: 76859
Other names: ATCC 51191, CCUG 32879, CIP 104879, DSM 19679, F. nucleatum subsp. animalis, Fusibacterium nucleatum subsp. animalis, Fusobacterium animalis, Fusobacterium nucleatum subsp. animalis, JCM 11025, NCTC 12276
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