STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamDDioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
kamE
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
kamA
Glutamate 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ALF18589.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.985
ALF18587.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
mutS2
Methionine ABC transporter substrate-binding protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
    0.915
ALF18591.1
3-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.869
ALF18590.1
3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
ALF18583.1
L-lysine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
deoD
Purine nucleoside phosphorylase DeoD-type; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.471
polA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.452
Your Current Organism:
Fusobacterium nucleatum animalis
NCBI taxonomy Id: 76859
Other names: ATCC 51191, CCUG 32879, CIP 104879, DSM 19679, F. nucleatum subsp. animalis, Fusibacterium nucleatum subsp. animalis, Fusobacterium animalis, Fusobacterium nucleatum subsp. animalis, JCM 11025, NCTC 12276
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