Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADR18714.1Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: ddf:DEFDS_0343 aminotransferase I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, I and II; PFAM: Aminotransferase class I and II. (435 aa)    
Predicted Functional Partners:
ADR18715.1
Selenium metabolism protein YedF; InterPro IPR019870: IPR001455; KEGG: ddf:DEFDS_0344 hypothetical protein; PFAM: SirA-like domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: selenium metabolism protein YedF; PFAM: DsrE/DsrF-like family; SirA-like protein; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
       0.630
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.601
ADR18713.1
Rubrerythrin; InterPro IPR003251; KEGG: ddf:DEFDS_0342 rubrerythrin domain protein; PFAM: Rubrerythrin; SPTR: Rubrerythrin domain protein; PFAM: Rubrerythrin.
       0.547
ADR18085.1
Glutamate synthase (NADPH) GltB3 subunit; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027: IPR017900: IPR017896: IPR002489; KEGG: ddf:DEFDS_2136 ferredoxin-dependent glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase alpha subunit domain protein; SPTR: Ferredoxin-dependent glutamate synthase, beta subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
  
  
 0.546
ADR18717.1
Helix-turn-helix domain protein; InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_0680 transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
  
  
 0.453
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.430
Your Current Organism:
Calditerrivibrio nitroreducens
NCBI taxonomy Id: 768670
Other names: C. nitroreducens DSM 19672, Calditerrivibrio nitroreducens DSM 19672, Calditerrivibrio nitroreducens Yu37-1, Calditerrivibrio nitroreducens str. DSM 19672, Calditerrivibrio nitroreducens strain DSM 19672, Deferribacteraceae bacterium Yu37-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.