Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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ADR18717.1Helix-turn-helix domain protein; InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_0680 transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix. (200 aa)    
Predicted Functional Partners:
ADR18687.1
Phosphate butyryltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR013096: IPR002505; KEGG: gem:GM21_1110 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; Cupin 2 conserved barrel domain protein; PRIAM: Phosphate butyryltransferase; SPTR: Phosphate butyryltransferase; PFAM: Cupin domain; Phosphate acetyl/butaryl transferase.
  
 
 0.586
ADR18718.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
       0.584
ADR18003.1
Chorismate mutase; COGs: COG0077 Prephenate dehydratase; InterPro IPR018528: IPR002701: IPR001086: IPR008242: IPR 010957: IPR020822: IPR002912; KEGG: ddf:DEFDS_2102 bifunctional chorismate mutase/prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; SPTR: Bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of gram positive AroA protein; chorismate mutase domain of proteobacterial P-protei [...]
  
  
 0.583
ADR19159.1
Silent information regulator protein Sir2; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: ddf:DEFDS_1437 Sir2 family transcriptional regulator; PFAM: Silent information regulator protein Sir2; SPTR: Transcriptional regulator, Sir2 family; PFAM: Sir2 family.
  
    0.558
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.549
ADR19030.1
Transcriptional regulator, MerR family; InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_1531 XRE family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix.
 
  
0.542
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.523
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.518
ADR18715.1
Selenium metabolism protein YedF; InterPro IPR019870: IPR001455; KEGG: ddf:DEFDS_0344 hypothetical protein; PFAM: SirA-like domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: selenium metabolism protein YedF; PFAM: DsrE/DsrF-like family; SirA-like protein; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
       0.512
ADR19618.1
Transcriptional regulator, GntR family; COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: ddf:DEFDS_1345 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: GntR domain protein; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.511
Your Current Organism:
Calditerrivibrio nitroreducens
NCBI taxonomy Id: 768670
Other names: C. nitroreducens DSM 19672, Calditerrivibrio nitroreducens DSM 19672, Calditerrivibrio nitroreducens Yu37-1, Calditerrivibrio nitroreducens str. DSM 19672, Calditerrivibrio nitroreducens strain DSM 19672, Deferribacteraceae bacterium Yu37-1
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