STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV16677.1PFAM: VacJ-like lipoprotein; KEGG: alv:Alvin_1916 VacJ family lipoprotein. (259 aa)    
Predicted Functional Partners:
EGV19276.1
PFAM: Porin, Gram-negative type; KEGG: alv:Alvin_2899 porin gram-negative type.
   
 
 0.940
EGV19520.1
KEGG: app:CAP2UW1_0780 hypothetical protein.
    
 
 0.915
EGV19599.1
KEGG: neu:NE1130 hypothetical protein.
    
 
 0.915
EGV19241.1
PFAM: Toluene tolerance; KEGG: alv:Alvin_2838 toluene tolerance family protein.
 
 
 
 0.862
EGV17526.1
PFAM: Toluene tolerance; KEGG: mca:MCA2792 hypothetical protein.
 
 
 
 0.841
EGV19242.1
PFAM: Mammalian cell entry related; KEGG: alv:Alvin_2839 mammalian cell entry related domain-containing protein.
 
   
 0.800
EGV20409.1
PFAM: Protein of unknown function DUF140; KEGG: sfu:Sfum_2414 hypothetical protein.
 
   
 0.584
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.534
EGV16678.1
GumN family protein; PFAM: GumN; KEGG: bmr:BMI_I1939 hypothetical protein.
       0.508
EGV19243.1
Protein of unknown function DUF140; KEGG: alv:Alvin_2840 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140.
 
   
 0.492
Your Current Organism:
Thiocapsa marina
NCBI taxonomy Id: 768671
Other names: T. marina 5811, Thiocapsa marina 5811, Thiocapsa marina str. 5811, Thiocapsa marina strain 5811
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.