Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
livM-2Branched-chain amino acid transport permease, LivM. (321 aa)    
Predicted Functional Partners:
ilvK
Branched-chain amino acid transport, periplasmic component.
 
 
 0.998
livH-2
Branched-chain amino acid transport permease, LivH.
 
 
 0.998
livG-2
Branched-chain amino acid transport ATP-binding protein, LivG.
 
 0.998
livF-2
Branched-chain amino acid transport ATP-binding protein, LivF.
 
 0.996
livH-3
Branched-chain amino acid transport permease protein.
 
 
 0.989
livG-3
Branched-chain amino acid transport system ATP-binding protein.
 
 0.988
livH
ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.985
livF-3
Branched-chain amino acid transport system ATP-binding protein.
 
 
 0.984
livK-2
Branched-chain amino acid transport system substrate-binding protein.
 
 
 0.983
livF
ABC-type branched-chain amino acid transport system, ATPase component.
 
 
 0.980
Your Current Organism:
Thermoproteus tenax
NCBI taxonomy Id: 768679
Other names: T. tenax Kra 1, Thermoproteus tenax DSM 2078, Thermoproteus tenax JCM 9277, Thermoproteus tenax Kra 1, Thermoproteus tenax str. Kra 1, Thermoproteus tenax strain Kra 1
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