Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsC-1Simple sugar transport system permease protein. (336 aa)    
Predicted Functional Partners:
rbsA
Sugar transport ATP-binding protein.
 
 
 0.999
rbsC-2
Ribose ABC transporter, permease protein.
 
0.999
tmpC
Sugar transport protein.
 
 
 0.996
TTX_1118
Thioesterase superfamily enzyme.
       0.543
TTX_1119
acyl-CoA transferases/carnitine dehydratase related enzyme.
       0.542
acs-2
acetyl-CoA synthetase 2.
       0.535
cdd
Cytidine deaminase.
  
  
 0.416
Your Current Organism:
Thermoproteus tenax
NCBI taxonomy Id: 768679
Other names: T. tenax Kra 1, Thermoproteus tenax DSM 2078, Thermoproteus tenax JCM 9277, Thermoproteus tenax Kra 1, Thermoproteus tenax str. Kra 1, Thermoproteus tenax strain Kra 1
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