STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSU_0088ABC transporter, ATP binding protein. (596 aa)    
Predicted Functional Partners:
MSU_0715
ABC transporter, permease protein.
  
 
 0.920
MSU_0087
ABC transporter, ATP binding protein.
      
0.750
MSU_0086
Hypothetical protein.
       0.746
pheS
phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
   0.665
phoU
Phosphate transport system regulatory protein PhoU.
  
    0.644
MSU_0089
Hypothetical protein.
       0.588
metK
S-adenosylmethionine synthetase.
  
    0.582
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
    0.547
MSU_0090
Hypothetical protein.
       0.536
potB
Spermidine/putrescine import permease PotB.
       0.488
Your Current Organism:
Mycoplasma suis
NCBI taxonomy Id: 768700
Other names: M. suis str. Illinois, Mycoplasma suis Illinois, Mycoplasma suis str. Illinois, Mycoplasma suis strain Illinois
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