Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MSU_0109Hypothetical protein. (156 aa)    
Predicted Functional Partners:
MSU_0110
Hypothetical protein.
       0.727
MSU_0108
Hypothetical protein.
      
0.664
MSU_0107
Hypothetical protein.
       0.660
MSU_0111
Hypothetical protein.
       0.657
MSU_0112
Hypothetical protein.
       0.656
MSU_0106
Hypothetical protein.
       0.642
MSU_0113
Hypothetical protein.
       0.622
MSU_0114
Hypothetical protein.
       0.622
MSU_0115
Hypothetical protein.
      
0.622
MSU_0116
Hypothetical protein.
       0.622
Your Current Organism:
Mycoplasma suis
NCBI taxonomy Id: 768700
Other names: M. suis str. Illinois, Mycoplasma suis Illinois, Mycoplasma suis str. Illinois, Mycoplasma suis strain Illinois
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