Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hpaIIMCytosine-specific DNA modification methylase, HpaII-like protein. (326 aa)    
Predicted Functional Partners:
metK
S-adenosylmethionine synthetase.
    
 0.971
MSU_0276
5'-3' exonuclease, DNA polymerase I-like protein.
     
 0.519
polA2
5'-3' exonuclease, DNA polymerase I like protein.
     
 0.519
cbiQ
Cobalt ABC transporter permease protein, CbiQ.
  
    0.482
MSU_0398
Cobalt transporter ATP-binding protein CbiO.
       0.433
nadD
Putative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
     
 0.426
Your Current Organism:
Mycoplasma suis
NCBI taxonomy Id: 768700
Other names: M. suis str. Illinois, Mycoplasma suis Illinois, Mycoplasma suis str. Illinois, Mycoplasma suis strain Illinois
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