STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFQ43092.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
AFQ43091.1
Putative stress-responsive transcriptional regulator; PFAM: PspC domain.
  
    0.864
AFQ43967.1
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.570
AFQ44445.1
PFAM: Histidine kinase; Sensor protein DegS; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.570
AFQ45954.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.570
AFQ43093.1
tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: DHH family; CBS domain; Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.549
AFQ43094.1
Zn-dependent protease; PFAM: Peptidase family M50.
       0.547
AFQ42388.1
Hypothetical protein.
  
  
 0.501
AFQ43167.1
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family.
  
  
 0.501
AFQ45606.1
PFAM: Protein kinase domain; PASTA domain.
  
    0.500
AFQ43090.1
Hypothetical protein.
       0.472
Your Current Organism:
Desulfosporosinus meridiei
NCBI taxonomy Id: 768704
Other names: D. meridiei DSM 13257, Desulfosporosinus meridiei DSM 13257, Desulfosporosinus meridiei str. DSM 13257, Desulfosporosinus meridiei strain DSM 13257, Desulfosporosinus sp. S10
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