STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFQ45236.1PFAM: Integral membrane protein DUF95. (326 aa)    
Predicted Functional Partners:
AFQ45235.1
Putative membrane protein/domain protein; PFAM: RDD family.
    0.974
AFQ45237.1
PFAM: Protein of unknown function DUF58.
 
  
 0.807
AFQ45240.1
Hypothetical protein.
 
     0.733
AFQ45239.1
Hypothetical protein.
 
     0.724
AFQ45241.1
Hypothetical protein.
 
     0.712
AFQ45238.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
    0.551
Your Current Organism:
Desulfosporosinus meridiei
NCBI taxonomy Id: 768704
Other names: D. meridiei DSM 13257, Desulfosporosinus meridiei DSM 13257, Desulfosporosinus meridiei str. DSM 13257, Desulfosporosinus meridiei strain DSM 13257, Desulfosporosinus sp. S10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.