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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFQ46431.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
AFQ46430.1
PFAM: Predicted membrane protein (DUF2232).
 
     0.919
AFQ43030.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.772
AFQ46101.1
PFAM: Protein of unknown function (DUF964); Belongs to the UPF0342 family.
  
     0.770
AFQ45669.1
Hypothetical protein; TIGRFAM: putative membrane fusion protein.
  
     0.768
AFQ46320.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.768
AFQ44442.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.767
AFQ45699.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
  
     0.767
AFQ45893.1
Signal transduction histidine kinase regulating citrate/malate metabolism.
  
     0.766
AFQ44529.1
TIGRFAM: putative membrane protein, TIGR04086 family.
  
     0.763
AFQ44546.1
Tfp pilus assembly protein PilF.
  
     0.763
Your Current Organism:
Desulfosporosinus meridiei
NCBI taxonomy Id: 768704
Other names: D. meridiei DSM 13257, Desulfosporosinus meridiei DSM 13257, Desulfosporosinus meridiei str. DSM 13257, Desulfosporosinus meridiei strain DSM 13257, Desulfosporosinus sp. S10
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