STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AET69963.1Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain. (167 aa)    
Predicted Functional Partners:
AET67238.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family.
   
 0.490
AET69964.1
Hypothetical protein.
     
 0.450
AET69962.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
  
    0.449
AET69466.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Putative cell wall binding repeat 2; Bacterial SH3 domain; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD.
  
  
 0.438
AET65957.1
PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family.
  
    0.425
Your Current Organism:
Desulfosporosinus orientis
NCBI taxonomy Id: 768706
Other names: D. orientis DSM 765, Desulfosporosinus orientis DSM 765, Desulfosporosinus orientis Singapore I, Desulfosporosinus orientis str. DSM 765, Desulfosporosinus orientis strain DSM 765
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.