Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHQ88240.1Hypothetical protein; PFAM: 3D domain. (143 aa)    
Predicted Functional Partners:
EHQ87286.1
Hypothetical protein; PFAM: 3D domain; G5 domain.
 
     0.753
sbcD-2
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
    0.746
EHQ88241.1
Hypothetical protein.
       0.737
EHQ88242.1
Hypothetical protein.
       0.737
EHQ88243.1
Hypothetical protein.
       0.737
EHQ88245.1
Hypothetical protein.
       0.737
EHQ88246.1
Hypothetical protein.
       0.737
EHQ88294.1
LysM domain-containing protein; PFAM: LysM domain.
   
  
 0.650
EHQ91751.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
   
  
 0.650
EHQ92091.1
LysM domain-containing protein; PFAM: LysM domain.
   
  
 0.650
Your Current Organism:
Desulfosporosinus youngiae
NCBI taxonomy Id: 768710
Other names: D. youngiae DSM 17734, Desulfosporosinus youngiae DSM 17734, Desulfosporosinus youngiae JW/YJL-B18, Desulfosporosinus youngiae str. DSM 17734, Desulfosporosinus youngiae strain DSM 17734
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