Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUU39872.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
CUU39873.1
Hypothetical protein.
       0.773
yejB
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
       0.693
CUU39869.1
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
       0.693
CUU39870.1
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
       0.693
CUU39871.1
Endonuclease III.
       0.693
CUU39874.1
Hypothetical protein.
       0.631
CUU39875.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase alpha subunit.
       0.462
CUU39876.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase beta subunit.
       0.454
Your Current Organism:
Helicobacter typhlonius
NCBI taxonomy Id: 76936
Other names: ATCC BAA-367, CCUG 48335, CIP 107729, H. typhlonius, Helicobacter typhlonicus, Helicobacter typhlonius Franklin et al. 2002, MIT 97-6810
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