STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_003530Unannotated protein. (416 aa)    
Predicted Functional Partners:
lolD
Unannotated protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.999
BV98_002522
Unannotated protein.
  
 0.985
BV98_002183
Unannotated protein.
  
 0.982
BV98_003720
Unannotated protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 
 0.961
BV98_002184
Unannotated protein.
  
  
 
0.930
bamA
Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.806
pal
Unannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 
 0.765
BV98_001954
Unannotated protein.
 
    0.754
BV98_003135
Unannotated protein.
 
    0.708
BV98_003134
Unannotated protein.
 
     0.707
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.