STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_000936Unannotated protein. (282 aa)    
Predicted Functional Partners:
BV98_000934
Unannotated protein; Belongs to the agmatine deiminase family.
 
 0.999
BV98_003545
Unannotated protein.
 
  
 0.941
BV98_000935
Unannotated protein.
       0.832
BV98_000937
Unannotated protein.
       0.790
BV98_001907
Unannotated protein.
    
 0.726
BV98_001399
Unannotated protein.
    
 0.726
GCA_002080435_01903
Unannotated protein.
    
 0.659
BV98_000885
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.659
BV98_003049
Unannotated protein.
   
 0.647
BV98_000167
Unannotated protein.
  
  
0.646
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.