Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BV98_000910 | BV98_000965 | GCA_002080435_00413 | GCA_002080435_00468 | Unannotated protein. | Unannotated protein. | 0.961 |
BV98_000910 | BV98_000967 | GCA_002080435_00413 | GCA_002080435_00470 | Unannotated protein. | Unannotated protein. | 0.939 |
BV98_000910 | BV98_002348 | GCA_002080435_00413 | GCA_002080435_00555 | Unannotated protein. | Unannotated protein. | 0.458 |
BV98_000910 | BV98_002631 | GCA_002080435_00413 | GCA_002080435_00128 | Unannotated protein. | Unannotated protein. | 0.835 |
BV98_000910 | BV98_003714 | GCA_002080435_00413 | GCA_002080435_01791 | Unannotated protein. | Unannotated protein. | 0.951 |
BV98_000910 | ilvC | GCA_002080435_00413 | GCA_002080435_00471 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.470 |
BV98_000910 | leuA | GCA_002080435_00413 | GCA_002080435_00473 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.928 |
BV98_000910 | leuB | GCA_002080435_00413 | GCA_002080435_02807 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.447 |
BV98_000910 | leuC | GCA_002080435_00413 | GCA_002080435_02230 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.916 |
BV98_000910 | leuD | GCA_002080435_00413 | GCA_002080435_02232 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.922 |
BV98_000965 | BV98_000910 | GCA_002080435_00468 | GCA_002080435_00413 | Unannotated protein. | Unannotated protein. | 0.961 |
BV98_000965 | BV98_000967 | GCA_002080435_00468 | GCA_002080435_00470 | Unannotated protein. | Unannotated protein. | 0.999 |
BV98_000965 | BV98_002348 | GCA_002080435_00468 | GCA_002080435_00555 | Unannotated protein. | Unannotated protein. | 0.979 |
BV98_000965 | BV98_003714 | GCA_002080435_00468 | GCA_002080435_01791 | Unannotated protein. | Unannotated protein. | 0.961 |
BV98_000965 | ilvC | GCA_002080435_00468 | GCA_002080435_00471 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.999 |
BV98_000965 | leuA | GCA_002080435_00468 | GCA_002080435_00473 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.949 |
BV98_000965 | leuB | GCA_002080435_00468 | GCA_002080435_02807 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.988 |
BV98_000965 | leuC | GCA_002080435_00468 | GCA_002080435_02230 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.921 |
BV98_000965 | leuD | GCA_002080435_00468 | GCA_002080435_02232 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.944 |
BV98_000967 | BV98_000910 | GCA_002080435_00470 | GCA_002080435_00413 | Unannotated protein. | Unannotated protein. | 0.939 |
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