STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_000969Unannotated protein; Belongs to the UPF0312 family. (208 aa)    
Predicted Functional Partners:
BV98_002236
Unannotated protein.
 
  
 0.713
ilvC
Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
       0.584
gpmA
Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
    0.536
BV98_001676
Unannotated protein; Belongs to the UPF0312 family.
 
  
0.473
BV98_000967
Unannotated protein.
       0.463
BV98_003686
Unannotated protein; Belongs to the Dps family.
   
    0.405
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.