STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_000356Unannotated protein. (156 aa)    
Predicted Functional Partners:
BV98_002508
Unannotated protein.
  
     0.705
BV98_000357
Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.697
BV98_003680
Unannotated protein.
  
     0.665
BV98_001701
Unannotated protein.
  
     0.655
BV98_002992
Unannotated protein; Belongs to the UPF0335 family.
  
     0.635
BV98_001134
Unannotated protein.
  
     0.633
atpF_1
Unannotated protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.632
BV98_003592
Unannotated protein.
  
     0.630
recO
Unannotated protein; Involved in DNA repair and RecF pathway recombination.
  
     0.630
BV98_000064
Unannotated protein.
  
     0.612
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.