STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_001473Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (625 aa)    
Predicted Functional Partners:
BV98_001471
Unannotated protein.
       0.773
BV98_001472
Unannotated protein.
       0.773
BV98_001474
Unannotated protein.
       0.773
BV98_003474
Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
  
  0.733
metK
Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.730
ahcY
Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.685
BV98_002915
Unannotated protein.
    
  0.640
BV98_001469
Unannotated protein.
       0.581
BV98_001470
Unannotated protein.
       0.568
BV98_000571
Unannotated protein.
 
  
 0.559
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.