STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002080435_02676Unannotated protein. (449 aa)    
Predicted Functional Partners:
GCA_002080435_02675
Unannotated protein.
 
     0.947
GCA_002080435_02674
Unannotated protein.
 
     0.946
BV98_002158
Unannotated protein.
 
     0.775
BV98_002296
Unannotated protein.
 
     0.775
GCA_002080435_03542
Unannotated protein.
 
     0.775
GCA_002080435_04164
Unannotated protein.
 
     0.775
BV98_002159
Unannotated protein.
 
     0.774
GCA_002080435_01527
Unannotated protein.
  
     0.774
GCA_002080435_01528
Unannotated protein.
 
     0.774
BV98_002295
Unannotated protein.
 
     0.774
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.