STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdpAUnannotated protein; Involved in the degradation of the phenoxypropionate herbicides. Catalyzes the enantiospecific cleavage of the ether bond in the herbicid R-dichlorprop ((R)-2-(2,4-dichlorophenoxy)propionate)(R- 2,4-DP) and R-mecoprop ((R)-2-(4-chloro-2-methylphenoxy)propionate)(R- 2,4-MCPP). It can also accept (RS)-4-chlorophenoxypropanoate, however it can only accept 2-oxoglutarate as oxygen acceptor. Belongs to the TfdA dioxygenase family. (202 aa)    
Predicted Functional Partners:
cysH
Unannotated protein; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.648
BV98_001267
Unannotated protein.
 
  0.606
prfC
Unannotated protein; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
 
  0.598
BV98_003055
Unannotated protein.
  
 
  0.503
BV98_003905
Unannotated protein.
  
 
  0.472
BV98_002083
Unannotated protein.
  
 
 0.459
BV98_000720
Unannotated protein.
  
 
  0.448
GCA_002080435_03093
Unannotated protein.
       0.447
BV98_003360
Unannotated protein; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.419
BV98_003054
Unannotated protein.
  
 
 0.416
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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