STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV98_003378Unannotated protein. (305 aa)    
Predicted Functional Partners:
BV98_003376
Unannotated protein.
 
   
 0.722
BV98_003379
Unannotated protein.
 
     0.715
BV98_003377
Unannotated protein.
 
    0.695
BV98_000815
Unannotated protein.
 
     0.544
BV98_002179
Unannotated protein.
 
     0.539
BV98_002180
Unannotated protein.
 
     0.537
BV98_003021
Unannotated protein.
  
  
  0.524
BV98_002314
Unannotated protein.
  
  
  0.504
BV98_001303
Unannotated protein.
  
  
  0.500
cydB_2
Unannotated protein.
       0.490
Your Current Organism:
Sphingobium herbicidovorans
NCBI taxonomy Id: 76947
Other names: ATCC 700291, CIP 106705, DSM 11019, IFO 16415, LMG 18315, LMG:18315, MBIC 3166, NBRC 16415, S. herbicidovorans, Sphingomonas herbicidovorans, strain MH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.