STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001202045_02512Unannotated protein. (458 aa)    
Predicted Functional Partners:
GCA_001202045_02513
Unannotated protein.
  
    0.801
GCA_001202045_02510
Unannotated protein.
       0.796
GCA_001202045_02511
Unannotated protein.
       0.796
GCA_001202045_02508
Unannotated protein.
       0.735
GCA_001202045_02509
Unannotated protein.
       0.732
GCA_001202045_02607
Unannotated protein.
  
     0.726
GCA_001202045_02926
Unannotated protein.
  
     0.726
GCA_001202045_02056
Unannotated protein.
  
     0.724
GCA_001202045_00420
Unannotated protein.
  
     0.717
GCA_001202045_00243
Unannotated protein.
  
     0.698
Your Current Organism:
Pseudorhodobacter ferrugineus
NCBI taxonomy Id: 77008
Other names: ATCC 25652, Agrobacterium ferrugineum, CIP 105952, DSM 5888, IAM 12616, IFO 15767, JCM 20687, NBRC 15767, P. ferrugineus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.