STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001202045_02735Unannotated protein. (190 aa)    
Predicted Functional Partners:
GCA_001202045_00584
Unannotated protein.
   
 
 0.780
GCA_001202045_02811
Unannotated protein.
    
 0.779
GCA_001202045_03147
Unannotated protein.
    
  0.727
GCA_001202045_01586
Unannotated protein.
    
  0.564
GCA_001202045_01587
Unannotated protein.
    
  0.564
GCA_001202045_02902
Unannotated protein.
    
  0.564
GCA_001202045_03248
Unannotated protein.
    
  0.564
GCA_001202045_02736
Unannotated protein.
       0.479
GCA_001202045_00615
Unannotated protein.
   
    0.446
GCA_001202045_03398
Unannotated protein.
   
    0.446
Your Current Organism:
Pseudorhodobacter ferrugineus
NCBI taxonomy Id: 77008
Other names: ATCC 25652, Agrobacterium ferrugineum, CIP 105952, DSM 5888, IAM 12616, IFO 15767, JCM 20687, NBRC 15767, P. ferrugineus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.