Malapachy_0565 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_0565

Uncharacterized protein. (704 aa)

Predicted Functional Partners:

Malapachy_3754

0.730

Malapachy_2380

0.505

PAN3

0.467

Malapachy_0324

0.441

Malapachy_0819

0.403

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0324	Malapachy_0565	A0A0M8MLM7	A0A0M8MJN8	Ept1-sn--diacylglycerol ethanolamine-and cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.441
Malapachy_0565	Malapachy_0324	A0A0M8MJN8	A0A0M8MLM7	Uncharacterized protein.	Ept1-sn--diacylglycerol ethanolamine-and cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.441
Malapachy_0565	Malapachy_0819	A0A0M8MJN8	A0A0M8MW95	Uncharacterized protein.	Peptide methionine sulfoxide reductase.	0.403
Malapachy_0565	Malapachy_2380	A0A0M8MJN8	A0A0M9VQJ2	Uncharacterized protein.	Protein YIP.	0.505
Malapachy_0565	Malapachy_3754	A0A0M8MJN8	A0A0M8MU04	Uncharacterized protein.	Nadh-ubiquinone oxidoreductase; Belongs to the complex I 75 kDa subunit family.	0.730
Malapachy_0565	PAN3	A0A0M8MJN8	A0A0N0RSP5	Uncharacterized protein.	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	0.467
Malapachy_0819	Malapachy_0565	A0A0M8MW95	A0A0M8MJN8	Peptide methionine sulfoxide reductase.	Uncharacterized protein.	0.403
Malapachy_2380	Malapachy_0565	A0A0M9VQJ2	A0A0M8MJN8	Protein YIP.	Uncharacterized protein.	0.505
Malapachy_3754	Malapachy_0565	A0A0M8MU04	A0A0M8MJN8	Nadh-ubiquinone oxidoreductase; Belongs to the complex I 75 kDa subunit family.	Uncharacterized protein.	0.730
PAN3	Malapachy_0565	A0A0N0RSP5	A0A0M8MJN8	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...]	Uncharacterized protein.	0.467