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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_1555CDC73_C domain-containing protein. (473 aa)    
Predicted Functional Partners:
Malapachy_0597
Uncharacterized protein.
   
 0.999
Malapachy_1942
Uncharacterized protein.
   
 0.999
Malapachy_3657
Rna polymerase ii-associated protein.
   
 0.999
Malapachy_3880
Wd repeat-containing protein 61.
    
 0.998
Malapachy_3473
Rna polymerase ii associated paf1 complex.
   
 0.995
Malapachy_3593
Fact complex subunit spt16.
   
 0.994
Malapachy_1226
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.973
Malapachy_4179
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.962
Malapachy_2684
Ccr4-transcriptional regulator involved in carbon catabolite repression.
   
 
 0.944
Malapachy_3080
Transcription initiation protein spt4.
    
 0.939
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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