Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Malapachy_2397Rab-protein geranylgeranyltransferase. (337 aa)    
Predicted Functional Partners:
Malapachy_1877
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.998
Malapachy_3142
Gtp-binding protein ypt1.
    
 0.879
Malapachy_0956
Uncharacterized protein.
    
 0.857
Malapachy_1707
Ras-like protein rab-6a.
    
 0.844
Malapachy_3454
Rab gtpase.
    
 0.821
Malapachy_0113
Gtp-binding protein ypt5.
    
 0.821
Malapachy_0560
Snare protein ykt6; Belongs to the synaptobrevin family.
   
 
 0.778
Malapachy_1816
Cox11-cytochrome-c oxidase assembly protein.
 
      0.655
Malapachy_2541
Ras-related protein rab-18.
    
 0.615
Malapachy_0479
Ras-domain-containing protein.
    
 0.613
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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