MEF1 protein (Malassezia pachydermatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MEF1

Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (825 aa)

Predicted Functional Partners:

Malapachy_2916

0.988

Malapachy_2539

0.980

Malapachy_0966

0.928

Malapachy_4004

0.918

Malapachy_0320

0.917

Malapachy_2223

0.917

Malapachy_2628

0.916

Malapachy_3644

0.916

Malapachy_3836

0.913

Malapachy_1592

0.913

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MEF1	Malapachy_0320	A0A0M8MMZ4	A0A0M8MJ66	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40s ribosomal protein s3.	0.917
MEF1	Malapachy_0966	A0A0M8MMZ4	A0A0M8MVU6	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Ribosomal protein s7.	0.928
MEF1	Malapachy_1592	A0A0M8MMZ4	A0A0M9VN99	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL23 family.	0.913
MEF1	Malapachy_2223	A0A0M8MMZ4	A0A0M9VQ58	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60s ribosomal protein l5.	0.917
MEF1	Malapachy_2539	A0A0M8MMZ4	A0A0M8MWS9	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40s ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.980
MEF1	Malapachy_2628	A0A0M8MMZ4	A0A0M8MS09	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.916
MEF1	Malapachy_2916	A0A0M8MMZ4	A0A0M8MQ39	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Uncharacterized protein.	0.988
MEF1	Malapachy_3644	A0A0M8MMZ4	A0A0M8MZA3	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	30s ribosomal protein s16.	0.916
MEF1	Malapachy_3836	A0A0M8MMZ4	A0A0M8MKS4	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60s ribosomal protein l35.	0.913
MEF1	Malapachy_4004	A0A0M8MMZ4	A0A0M8MPU9	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60s ribosomal protein mitochondrial.	0.918
Malapachy_0320	MEF1	A0A0M8MJ66	A0A0M8MMZ4	40s ribosomal protein s3.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.917
Malapachy_0320	Malapachy_0966	A0A0M8MJ66	A0A0M8MVU6	40s ribosomal protein s3.	Ribosomal protein s7.	0.991
Malapachy_0320	Malapachy_1592	A0A0M8MJ66	A0A0M9VN99	40s ribosomal protein s3.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL23 family.	0.999
Malapachy_0320	Malapachy_2223	A0A0M8MJ66	A0A0M9VQ58	40s ribosomal protein s3.	60s ribosomal protein l5.	0.999
Malapachy_0320	Malapachy_2539	A0A0M8MJ66	A0A0M8MWS9	40s ribosomal protein s3.	40s ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
Malapachy_0320	Malapachy_2628	A0A0M8MJ66	A0A0M8MS09	40s ribosomal protein s3.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.999
Malapachy_0320	Malapachy_3644	A0A0M8MJ66	A0A0M8MZA3	40s ribosomal protein s3.	30s ribosomal protein s16.	0.999
Malapachy_0320	Malapachy_3836	A0A0M8MJ66	A0A0M8MKS4	40s ribosomal protein s3.	60s ribosomal protein l35.	0.999
Malapachy_0320	Malapachy_4004	A0A0M8MJ66	A0A0M8MPU9	40s ribosomal protein s3.	60s ribosomal protein mitochondrial.	0.998
Malapachy_0966	MEF1	A0A0M8MVU6	A0A0M8MMZ4	Ribosomal protein s7.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.928

page 1 of 5

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About