Malapachy_2940 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_2940

Tho complex subunit 3. (371 aa)

Predicted Functional Partners:

Malapachy_0610

0.998

Malapachy_1794

0.998

Malapachy_1951

0.998

Malapachy_2748

0.998

Malapachy_2757

0.927

Malapachy_0545

0.924

Malapachy_2153

0.848

Malapachy_0242

0.846

Malapachy_4249

0.774

Malapachy_2361

0.745

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0242	Malapachy_0545	A0A0M8MSD2	A0A0M9VN29	Uncharacterized protein.	Atp-dependent rna helicase sub2.	0.419
Malapachy_0242	Malapachy_1794	A0A0M8MSD2	A0A0M9VNQ1	Uncharacterized protein.	Uncharacterized protein.	0.468
Malapachy_0242	Malapachy_1951	A0A0M8MSD2	A0A0M9VNW2	Uncharacterized protein.	Uncharacterized protein.	0.902
Malapachy_0242	Malapachy_2153	A0A0M8MSD2	A0A0M9VQD7	Uncharacterized protein.	Tho complex subunit.	0.706
Malapachy_0242	Malapachy_2757	A0A0M8MSD2	A0A0M8MHB3	Uncharacterized protein.	Yra1-rna annealing protein.	0.907
Malapachy_0242	Malapachy_2940	A0A0M8MSD2	A0A0M8MNT6	Uncharacterized protein.	Tho complex subunit 3.	0.846
Malapachy_0242	Malapachy_4249	A0A0M8MSD2	A0A0M8MV04	Uncharacterized protein.	Rna-binding protein.	0.562
Malapachy_0545	Malapachy_0242	A0A0M9VN29	A0A0M8MSD2	Atp-dependent rna helicase sub2.	Uncharacterized protein.	0.419
Malapachy_0545	Malapachy_0610	A0A0M9VN29	A0A0M8MSI9	Atp-dependent rna helicase sub2.	G-patch_2 domain-containing protein.	0.981
Malapachy_0545	Malapachy_1794	A0A0M9VN29	A0A0M9VNQ1	Atp-dependent rna helicase sub2.	Uncharacterized protein.	0.968
Malapachy_0545	Malapachy_1951	A0A0M9VN29	A0A0M9VNW2	Atp-dependent rna helicase sub2.	Uncharacterized protein.	0.961
Malapachy_0545	Malapachy_2153	A0A0M9VN29	A0A0M9VQD7	Atp-dependent rna helicase sub2.	Tho complex subunit.	0.966
Malapachy_0545	Malapachy_2361	A0A0M9VN29	A0A0M9VQM1	Atp-dependent rna helicase sub2.	SAP domain-containing protein.	0.974
Malapachy_0545	Malapachy_2748	A0A0M9VN29	A0A0M9VQR7	Atp-dependent rna helicase sub2.	Uncharacterized protein.	0.968
Malapachy_0545	Malapachy_2757	A0A0M9VN29	A0A0M8MHB3	Atp-dependent rna helicase sub2.	Yra1-rna annealing protein.	0.996
Malapachy_0545	Malapachy_2940	A0A0M9VN29	A0A0M8MNT6	Atp-dependent rna helicase sub2.	Tho complex subunit 3.	0.924
Malapachy_0545	Malapachy_4249	A0A0M9VN29	A0A0M8MV04	Atp-dependent rna helicase sub2.	Rna-binding protein.	0.923
Malapachy_0610	Malapachy_0545	A0A0M8MSI9	A0A0M9VN29	G-patch_2 domain-containing protein.	Atp-dependent rna helicase sub2.	0.981
Malapachy_0610	Malapachy_1794	A0A0M8MSI9	A0A0M9VNQ1	G-patch_2 domain-containing protein.	Uncharacterized protein.	0.997
Malapachy_0610	Malapachy_1951	A0A0M8MSI9	A0A0M9VNW2	G-patch_2 domain-containing protein.	Uncharacterized protein.	0.998