STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_3147RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (661 aa)    
Predicted Functional Partners:
Malapachy_0376
Transcription factor tfiif complex alpha subunit tfg1.
   
 0.992
Malapachy_1478
Transcription elongation factor.
   
 0.985
Malapachy_1226
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.981
Malapachy_1629
Transcription elongation factor spt6.
     
 0.979
Malapachy_1199
Transcription factor iws1.
   
 0.977
Malapachy_3092
Insert subdomain of rna polymerase alpha subunit.
    
 0.967
Malapachy_1201
Rna polymerase ii subunit.
    
 0.957
Malapachy_3887
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.943
Malapachy_0181
Tfg2-tfiif subunit (Transcription initiation factor) 54 kd.
    
 0.917
Malapachy_3695
Rpb4-16 kd subunit of dna-directed rna polymerase ii.
    
 0.899
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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