STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Malapachy_4151Pseudouridine synthase. (895 aa)    
Predicted Functional Partners:
Malapachy_2551
Trna pseudouridine synthase d.
    
 
 0.860
Malapachy_1817
Ribosomal protein l17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.829
Malapachy_4226
Mss1p.
  
 
 0.817
Malapachy_0620
Mrpl9-mitochondrial ribosomal large subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.762
Malapachy_3026
Rib7-htp reductase.
     
 0.760
Malapachy_2590
50s ribosomal protein l13; Belongs to the universal ribosomal protein uL13 family.
  
   0.756
Malapachy_1968
Ribosomal protein l15.
  
   0.755
Malapachy_4167
Mitochondrial gtpase.
   
 
 0.748
Malapachy_0142
Mitochondrial ribosomal protein l11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.745
Malapachy_1665
Mrp-l47-domain-containing protein.
    
 
 0.745
Your Current Organism:
Malassezia pachydermatis
NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis
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