Malapachy_4062 protein (Malassezia pachydermatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Malapachy_4062

Zf-zpr1-domain-containing protein. (494 aa)

Predicted Functional Partners:

Malapachy_0629

0.900

Malapachy_1032

0.704

Malapachy_0289

0.576

Malapachy_3391

0.576

Malapachy_3634

0.547

Malapachy_1574

0.507

Malapachy_3081

0.475

Malapachy_2803

0.474

Malapachy_1761

0.463

Malapachy_3753

0.459

Your Current Organism:

Malassezia pachydermatis

NCBI taxonomy Id: 77020
Other names: M. pachydermatis, Pityrosporum pachydermatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Malapachy_0289	Malapachy_1574	A0A0M9VMN2	A0A0M9VNA4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Wd-repeat-containing protein.	0.906
Malapachy_0289	Malapachy_1761	A0A0M9VMN2	A0A0M9VNX0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	J domain-containing protein.	0.449
Malapachy_0289	Malapachy_2803	A0A0M9VMN2	A0A0M9VMQ1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Brix domain-containing protein.	0.901
Malapachy_0289	Malapachy_3081	A0A0M9VMN2	A0A0M8MYM6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Mrna export factor elf1.	0.945
Malapachy_0289	Malapachy_3391	A0A0M9VMN2	A0A0N0RSP4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Noc2-domain-containing protein.	0.894
Malapachy_0289	Malapachy_3634	A0A0M9VMN2	A0A0M8MP86	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	60s ribosomal protein l9.	0.849
Malapachy_0289	Malapachy_4062	A0A0M9VMN2	A0A0M8MPM4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Zf-zpr1-domain-containing protein.	0.576
Malapachy_0629	Malapachy_4062	A0A0M8MUS1	A0A0M8MPM4	Uracil phosphoribosyltransferase.	Zf-zpr1-domain-containing protein.	0.900
Malapachy_1032	Malapachy_3081	A0A0M9VPZ9	A0A0M8MYM6	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Mrna export factor elf1.	0.795
Malapachy_1032	Malapachy_3634	A0A0M9VPZ9	A0A0M8MP86	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60s ribosomal protein l9.	0.866
Malapachy_1032	Malapachy_4062	A0A0M9VPZ9	A0A0M8MPM4	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Zf-zpr1-domain-containing protein.	0.704
Malapachy_1574	Malapachy_0289	A0A0M9VNA4	A0A0M9VMN2	Wd-repeat-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.906
Malapachy_1574	Malapachy_2803	A0A0M9VNA4	A0A0M9VMQ1	Wd-repeat-containing protein.	Brix domain-containing protein.	0.894
Malapachy_1574	Malapachy_3081	A0A0M9VNA4	A0A0M8MYM6	Wd-repeat-containing protein.	Mrna export factor elf1.	0.945
Malapachy_1574	Malapachy_3391	A0A0M9VNA4	A0A0N0RSP4	Wd-repeat-containing protein.	Noc2-domain-containing protein.	0.901
Malapachy_1574	Malapachy_4062	A0A0M9VNA4	A0A0M8MPM4	Wd-repeat-containing protein.	Zf-zpr1-domain-containing protein.	0.507
Malapachy_1761	Malapachy_0289	A0A0M9VNX0	A0A0M9VMN2	J domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.449
Malapachy_1761	Malapachy_2803	A0A0M9VNX0	A0A0M9VMQ1	J domain-containing protein.	Brix domain-containing protein.	0.519
Malapachy_1761	Malapachy_4062	A0A0M9VNX0	A0A0M8MPM4	J domain-containing protein.	Zf-zpr1-domain-containing protein.	0.463
Malapachy_2803	Malapachy_0289	A0A0M9VMQ1	A0A0M9VMN2	Brix domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.901